bioversions
Get the current version for biological databases
Decision gist · record as of 2026-08-14
Yes. The package is actively maintained, has no known vulnerabilities, uses a permissive MIT license, and solves a real problem for bioinformatics workflows—reliably tracking biological database versions. Low install friction and broad Python version support (3.11–3.14) make it a straightforward addition to any biomedical data pipeline.AI-flagged interpretation of the facts on this page — verify before relying
Before you install
- Requires Python 3.11 or later.
- Cache is stored in ~/.data/bioversions by default; set BIOVERSIONS_HOME environment variable to override.
- Low install friction with a pure Python wheel distribution.
License · maintenance · safety
MIT (permissive) — MIT license permits commercial and private use with minimal restrictions; suitable for most projects.
last release 2026-08-14 (0 days) · last repo commit 2026-08-14 · 31 stars
0 known vulnerabilities (OSV.dev, 2026-08-14) · 270,008 downloads/mo, #8,245 on PyPI
Alternatives
Verify before relying
import bioversions
version = bioversions.get_version("biogrid")
print(version)
# Or resolve for more details
bioversion = bioversions.resolve("biogrid")
print(bioversion.version)- How many biological databases are currently supported in the version lookup system
- Whether the daily-updated static listing at biopragmatics.github.io/bioversions is automatically synchronized with the package
- Performance characteristics when querying many databases in succession
What it is and what it does
Bioversions is a Python package that tracks and serves the current version numbers for biological and biomedical databases. It maintains a curated registry of versions for databases like BioGRID and provides both a programmatic API and command-line interface to query them. The package caches results locally (by default in ~/.data/bioversions) and refreshes once per day, reducing network overhead for repeated queries.
The package includes a web application mode that can be launched locally to serve versions via HTTP endpoints, making it useful for shell scripts, data pipelines, and automated workflows that need to download specific versions of biological databases. It is built on a modular architecture where new database sources can be added by extending the Getter class.
Use it for
- Download specific versions of biological databases in shell scripts using the CLI: `bioversions get biogrid`
- Query current database versions programmatically in Python data pipelines without repeated network calls
- Run a local HTTP API server to resolve database versions for downstream tools and services
- Integrate version tracking into reproducible bioinformatics workflows that depend on specific database releases
- Extend the package with custom database sources by implementing new Getter subclasses
Worth the install?
AI-flagged interpretation of the facts on this page. Verify before relying on it.
Yes.
The package is actively maintained, has no known vulnerabilities, uses a permissive MIT license, and solves a real problem for bioinformatics workflows—reliably tracking biological database versions. Low install friction and broad Python version support (3.11–3.14) make it a straightforward addition to any biomedical data pipeline.
Install
bioversions on PyPI
Before you install
Low install friction with a pure Python wheel distribution. Actively maintained with a release on 2026-08-14 and recent commits; supports Python 3.11 through 3.14.
Requires Python 3.11 or later. Cache is stored in ~/.data/bioversions by default; set BIOVERSIONS_HOME environment variable to override.
License in practice
MIT license permits commercial and private use with minimal restrictions; suitable for most projects.
Quickstart
import bioversions
version = bioversions.get_version("biogrid")
print(version)
# Or resolve for more details
bioversion = bioversions.resolve("biogrid")
print(bioversion.version)Verify before relying
- How many biological databases are currently supported in the version lookup system
- Whether the daily-updated static listing at biopragmatics.github.io/bioversions is automatically synchronized with the package
- Performance characteristics when querying many databases in succession
Package facts
| License | MIT permissive |
| Python support | Supports the current Python release >=3.11 |
| Install friction | Low. Pure-Python wheel |
| Runtime dependencies | 16 packagesrequestsbeautifulsoup4pystowclickclick-default-grouptabulatemore-clickpyyamltqdmbioregistrylxmlpydanticpsycopg2-binarypython-dateutilclass-resolverror-downloader |
| Maintenance | Actively maintained 0 days since the last release |
| Last repo commit | |
| First released | |
| Downloads | 270,008 / month, #8,245 on PyPI 30-day window, as of 2026-08-14 |
| Known vulnerabilities | None known OSV.dev, checked 2026-08-14 |
| Classifiers | Development Status :: 4 - BetaEnvironment :: ConsoleFramework :: PytestFramework :: SphinxFramework :: toxIntended Audience :: DevelopersNatural Language :: EnglishOperating System :: OS IndependentProgramming Language :: PythonProgramming Language :: Python :: 3 :: OnlyProgramming Language :: Python :: 3.11Programming Language :: Python :: 3.12Programming Language :: Python :: 3.13Programming Language :: Python :: 3.14Typing :: Typed |
Evidence: bioversions-0.11.1-py3-none-any.whl
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