---
id: jaechang-hits/SciAgent-Skills/plink2-gwas-analysis
version: "f12c519e"
license: NOASSERTION
install: manual
updated: 2026-07-24
---

# Plink2 Gwas Analysis — PLINK2 is a high-performance tool for genome-wide association studies and population genetics on large cohorts. It processes PLINK binary, VCF, and BGEN formats while performing sample and variant quality control, kinship estimation, principal component analysis, and linear or logistic regression association testing. Output is compatible with Manhattan plots and meta-analysis workflows.

Publisher: jaechang-hits · Stars: 284 · Updated: 2026-07-24

Install (manual): `git clone https://github.com/jaechang-hits/SciAgent-Skills`

*Unlicensed repository - metadata only, no file contents reproduced.*

[View on SkillFed](https://skillfed.io/jaechang-hits/SciAgent-Skills/plink2-gwas-analysis) · [View on GitHub](https://github.com/jaechang-hits/SciAgent-Skills)