{"categories":[{"label":"Bio-Informatics","url":"https://skillfed.io/packages/category/scientific-engineering-bio-informatics"}],"enrichment":{"capability":"Refgenie manages standardized folder structures and indexes for reference genome files, automating organization and retrieval of genomic resources for bioinformatics workflows.","skillfed_tags":["bioinformatics","genome-management","ngs"],"use_cases":["Organize and index multiple reference genomes in a consistent structure for a research group","Automate genome resource discovery and retrieval within NGS analysis pipelines","Manage version control and metadata for reference genome collections across projects","Standardize genome file locations and naming conventions to reduce setup errors","Integrate genome resource management into reproducible bioinformatics workflows"],"what_it_does":"Refgenie is a reference genome resource manager for bioinformatics workflows. It creates and maintains a standardized folder structure for genome files and their associated indexes, making it easier to organize, discover, and reuse genomic data across projects. The package handles the logistics of genome resource management\u2014where files live, how they're named, what indexes exist\u2014so researchers don't have to manually track these details.\n\nThe tool is actively maintained, supports Python 3.10 through 3.14, and carries no known security vulnerabilities. Installation is straightforward with a pure Python wheel, making it accessible for integration into existing bioinformatics environments.","worth_installing":"Yes. Refgenie is actively maintained, carries no security vulnerabilities, installs with low friction, and is licensed permissively under BSD-2-Clause. It solves a genuine organizational problem in genomics workflows. Install it if you work with multiple genomes or need to share genome resources across a team or pipeline."},"id":"refgenie","links":{"html":"https://skillfed.io/packages/refgenie","md":"https://skillfed.io/packages/refgenie.md","pypi":"https://pypi.org/project/refgenie/"},"maintenance":{"status":"active"},"meta":{"latest_release":"2026-02-25","license_spdx":"BSD-2-Clause","license_treatment":"permissive","name":"refgenie","python_support":"supports_current","summary":"Refgenie creates a standardized folder structure for reference genome files and indexes"},"popularity":{"monthly_downloads":97243,"position":13161,"tier":"top_15000"},"security":{"n_vulnerabilities":0},"version":"0.13.0"}