{"categories":[{"label":"Scientific/Engineering","url":"https://skillfed.io/packages/category/scientific-engineering/7"}],"enrichment":{"capability":"PyBIDS provides a Python interface to query, validate, and interact with neuroimaging datasets that conform to the BIDS (Brain Imaging Data Structure) standard format.","skillfed_tags":["neuroimaging","bids-standard","data-query"],"use_cases":["Query and retrieve specific imaging files from a BIDS dataset by subject, session, task, or modality without manual directory traversal.","Validate that a neuroimaging dataset conforms to BIDS specification before analysis or sharing.","Programmatically access metadata and file paths for batch processing of imaging data in research pipelines.","Generate reports on dataset structure and contents using the reports module.","Integrate BIDS dataset access into Python-based neuroimaging analysis workflows alongside nibabel and scipy."],"what_it_does":"PyBIDS is a Python library that centralizes interactions with brain imaging datasets formatted according to the BIDS standard. It provides tools to query, validate, and programmatically access neuroimaging data organized in the standardized BIDS layout, eliminating the need to manually navigate directory structures and file naming conventions.\n\nThe package wraps core neuroimaging tools (numpy, scipy, nibabel, pandas) and integrates with bids-validator to ensure dataset compliance. It supports Python 3 on POSIX systems (Linux, macOS) and is actively maintained by the BIDS community. Installation brings in 12 runtime dependencies by default, though core querying functionality requires only the bids-validator package.","worth_installing":"Yes. PyBIDS is actively maintained, has no known vulnerabilities, uses a permissive MIT license, and solves a concrete problem for neuroimaging researchers working with BIDS-formatted data. Low install friction makes it a safe choice. Install only if you work with BIDS datasets; it is not a general-purpose tool."},"id":"pybids","links":{"html":"https://skillfed.io/packages/pybids","md":"https://skillfed.io/packages/pybids.md","pypi":"https://pypi.org/project/pybids/"},"maintenance":{"status":"active"},"meta":{"latest_release":"2026-03-12","license_spdx":null,"license_treatment":"permissive","name":"pybids","python_support":"supports_current","summary":"bids: interface with datasets conforming to BIDS"},"popularity":{"monthly_downloads":136311,"position":11399,"tier":"top_15000"},"security":{"n_vulnerabilities":0},"version":"0.22.0"}