{"categories":[{"label":"Bio-Informatics","url":"https://skillfed.io/packages/category/scientific-engineering-bio-informatics"}],"enrichment":{"capability":"peppy reads and manages Portable Encapsulated Projects (PEPs)\u2014a metadata format for organizing bioinformatics workflows and sequencing projects\u2014providing Python access to project configuration and sample metadata.","skillfed_tags":["bioinformatics","metadata-management","workflow-orchestration"],"use_cases":["Load and parse PEP metadata files to configure bioinformatics analysis pipelines","Access sample metadata and project configuration programmatically in workflow scripts","Validate project structure and metadata consistency before running analyses","Integrate project metadata into reproducible research workflows","Build tools that manage large-scale sequencing experiments with standardized metadata"],"what_it_does":"peppy is a Python library for reading and managing Portable Encapsulated Projects (PEPs), a standardized metadata format used in bioinformatics to organize project configuration, sample metadata, and workflow parameters. It parses PEP YAML files and provides programmatic access to project structure and sample information, making it useful for building reproducible bioinformatics pipelines and managing large-scale sequencing experiments.\n\nThe package depends on pandas, pyyaml, rich, ubiquerg, numpy, and pephubclient to handle data manipulation, YAML parsing, terminal output formatting, and integration with external project repositories. It targets bioinformatics workflows and is actively maintained, with support for Python 3.8 through 3.12.","worth_installing":"Yes, if you work with bioinformatics projects using the PEP standard or need to manage project metadata in Python workflows. Low install friction, active maintenance, permissive license, and no known vulnerabilities make it a safe choice. Not relevant for non-bioinformatics use cases."},"id":"peppy","links":{"html":"https://skillfed.io/packages/peppy","md":"https://skillfed.io/packages/peppy.md","pypi":"https://pypi.org/project/peppy/"},"maintenance":{"status":"active"},"meta":{"latest_release":"2025-10-20","license_spdx":null,"license_treatment":"permissive","name":"peppy","python_support":"unspecified","summary":"A python-based project metadata manager for portable encapsulated projects"},"popularity":{"monthly_downloads":117880,"position":12144,"tier":"top_15000"},"security":{"n_vulnerabilities":0},"version":"0.40.8"}