{"categories":[{"label":"Bio-Informatics","url":"https://skillfed.io/packages/category/scientific-engineering-bio-informatics"}],"enrichment":{"capability":"fastpdb is a Rust-based drop-in replacement for Biotite's PDBFile that reads and writes PDB structure files with significantly higher performance than the original Python implementation.","skillfed_tags":["structural-biology","pdb-format","rust-binding"],"use_cases":["Accelerating PDB file parsing in large-scale structural biology data pipelines.","Replacing biotite's PDBFile in existing code without API changes to gain performance.","Reading and writing protein structures for molecular dynamics or docking simulations.","Batch processing of PDB files in bioinformatics workflows where I/O is a bottleneck."],"what_it_does":"fastpdb is a Rust-compiled library that provides a drop-in replacement for Biotite's PDBFile class, maintaining the same API while delivering multiple times faster performance for reading and writing PDB structure files. It is designed for structural biology workflows where PDB files are a standard input format.\n\nThe package wraps Rust code to accelerate I/O operations on Protein Data Bank files, making it suitable for high-throughput structural analysis pipelines. It depends on biotite at runtime and supports Python versions from 3.7 onward across macOS, Windows, and Linux. The repository is now archived and marked abandoned, meaning no new features or maintenance should be expected, though the latest release is recent enough to support current Python versions.","worth_installing":"Yes, if you are already using biotite for PDB file I/O and performance is a concern\u2014fastpdb is a straightforward, permissively licensed replacement with no API changes. However, the abandoned repository status means no future updates or bug fixes should be expected; install only if the current feature set meets your needs and you are comfortable maintaining a frozen dependency."},"id":"fastpdb","links":{"html":"https://skillfed.io/packages/fastpdb","md":"https://skillfed.io/packages/fastpdb.md","pypi":"https://pypi.org/project/fastpdb/"},"maintenance":{"status":"abandoned"},"meta":{"latest_release":"2025-05-27","license_spdx":null,"license_treatment":"permissive","name":"fastpdb","python_support":"supports_current","summary":"A high performance drop-in replacement for Biotite's PDBFile."},"popularity":{"monthly_downloads":117709,"position":12152,"tier":"top_15000"},"security":{"n_vulnerabilities":0},"version":"1.3.3"}