{"categories":[{"label":"Software Development","url":"https://skillfed.io/packages/category/software-development/16"},{"label":"Testing","url":"https://skillfed.io/packages/category/software-development-testing/5"},{"label":"Code Generators","url":"https://skillfed.io/packages/category/software-development-code-generators"}],"enrichment":{"capability":"Provides a Python-packaged version of the EDAM ontology, a standardized vocabulary for bioinformatics operations, data types, and formats.","skillfed_tags":["bioinformatics","ontology","data-standards"],"use_cases":["Annotate bioinformatics workflows or tool descriptions with standardized EDAM operation and data type terms","Build Galaxy tool wrappers that reference EDAM vocabulary without external ontology lookups","Validate or map bioinformatics tool inputs and outputs against a shared ontology standard","Generate documentation or metadata for bioinformatics software using EDAM classifications"],"what_it_does":"This package bundles the EDAM ontology\u2014a standardized vocabulary of bioinformatics operations, data types, identifiers, topics, and formats\u2014as a Python distribution. EDAM is widely used in bioinformatics tools and workflows to annotate and describe computational tasks and data. The package exists primarily to let Python projects, especially Galaxy packages, access this ontology without requiring non-Python dependencies or external network calls.\n\nThe package is a direct Python port of the EDAM ontology maintained at edamontology.org. It carries no runtime dependencies, installs cleanly on Python 3.9 and later, and is actively maintained. The underlying ontology is published under CC BY-SA 4.0 and described in a peer-reviewed article (Ison et al., 2013).","worth_installing":"Yes, if you work with bioinformatics tools or workflows that need to reference EDAM terms. The package has no dependencies, installs easily, and is actively maintained. If you don't need EDAM vocabulary, there's no reason to install it."},"id":"edam-ontology","links":{"html":"https://skillfed.io/packages/edam-ontology","md":"https://skillfed.io/packages/edam-ontology.md","pypi":"https://pypi.org/project/edam-ontology/"},"maintenance":{"status":"active"},"meta":{"latest_release":"2025-10-30","license_spdx":"MIT","license_treatment":"permissive","name":"edam-ontology","python_support":"supports_current","summary":"Versioned, Python packaged EDAM ontology (http://edamontology.org/) data."},"popularity":{"monthly_downloads":112134,"position":12380,"tier":"top_15000"},"security":{"n_vulnerabilities":0},"version":"1.25.3"}