{"categories":[{"label":"Bio-Informatics","url":"https://skillfed.io/packages/category/scientific-engineering-bio-informatics"}],"enrichment":{"capability":"Biotite provides a unified Python library for computational molecular biology, handling sequence and biomolecular structure data through file I/O, analysis, visualization, and database integration.","skillfed_tags":["bioinformatics","molecular-biology","sequence-analysis"],"use_cases":["Download protein sequences from NCBI Entrez and perform sequence alignment using substitution matrices.","Parse and analyze biomolecular structure files (PDB, mmCIF) to identify structural features like disulfide bonds.","Identify homologous sequence regions across a protein family using sequence search and alignment tools.","Build custom bioinformatics pipelines by combining file parsing, analysis, and visualization in a single workflow.","Visualize sequence alignments and protein structures for publication or interactive exploration."],"what_it_does":"Biotite is a comprehensive Python library for computational molecular biology that unifies common bioinformatics workflows into a single API. It handles sequence and biomolecular structure data through file I/O (reading and writing popular formats), database queries (searching and fetching from biological databases), analysis and editing, visualization, and external tool integration. The library stores most data internally as NumPy ndarray objects, enabling fast C-accelerated computation, NumPy-like indexing syntax, and direct access to underlying arrays for custom analysis.\n\nThe package targets both small analysis scripts and larger bioinformatics software projects. It depends on numpy, requests, msgpack, networkx, and biotraj at runtime, with optional matplotlib support for plotting. The library is actively maintained, supports current Python versions (3.12+), and has no known security vulnerabilities.","worth_installing":"Yes. Biotite is production-stable (Development Status 5), actively maintained, carries no known vulnerabilities, and offers a cohesive API for common bioinformatics tasks. Medium install friction is offset by prebuilt wheels and strong community adoption (top 5000 PyPI). Install if you work with sequences or structures; the unified interface and NumPy integration reduce boilerplate significantly."},"id":"biotite","links":{"html":"https://skillfed.io/packages/biotite","md":"https://skillfed.io/packages/biotite.md","pypi":"https://pypi.org/project/biotite/"},"maintenance":{"status":"active"},"meta":{"latest_release":"2026-06-22","license_spdx":"BSD-3-Clause","license_treatment":"permissive","name":"biotite","python_support":"supports_current","summary":"A comprehensive library for computational molecular biology"},"popularity":{"monthly_downloads":3319784,"position":2662,"tier":"top_5000"},"security":{"n_vulnerabilities":0},"version":"1.7.1"}